rockit f94f5412-dc90-4e8f-b229-431f00c63ebd | Research Group Data and Web Science

< prev | next >

rockit process (v0.5.227)

ID: f94f5412-dc90-4e8f-b229-431f00c63ebd (error)

State: error / restart

date / time / ip

added:

2021-02-13 07:15:32

start:

2021-02-13 07:15:32

user IP:

118.185.70.25

input information

gap:

default

inference:

map

input:

protein.mln

data:

interaction.db

log

process created
java -Xmx8G -jar /home/timo/app/core/systems/rockit/0.5.227/rockit.jar -data /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/interaction.db -gap -1 -input /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/protein.mln -output /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/output.db -para /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/rockit.properties
==== Start RockIt =====Sat Feb 13 07:15:33 CET 2021
-input /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/protein.mln
-data /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/interaction.db
-output /home/timo/app/core/data/f94f5412-dc90-4e8f-b229-431f00c63ebd/output.db
-para: use rockit.properties file.
-gap: use gurobi standard gap.
-debug output false
-use MAP inference
Exception in thread "main" com.googlecode.rockit.exception.ParseException: 
===========================================================================
RockIt terminated with a parse exception either in your -input or -data file. 

Please also check for messages like line X:Y ... (where X is the line number and Y the position within the line) above and address them first.
---------------------------------------------------------
Predicate interaction at line 10 and position 0 had already been created. The new predicate is ignored
---------------------------------------------------------
If you are not able to identify your parsing error, please generate a ticket at https://code.google.com/p/rockit/issues/list, upload your MLN and data file in this ticket, and post the error message. 
===========================================================================

	at com.googlecode.rockit.parser.ModelParser.predicateDefinition(ModelParser.java:1208)
	at com.googlecode.rockit.parser.ModelParser.model(ModelParser.java:151)
	at com.googlecode.rockit.parser.SyntaxReader.getModelANTLR(SyntaxReader.java:180)
	at com.googlecode.rockit.parser.SyntaxReader.getModel(SyntaxReader.java:42)
	at com.googlecode.rockit.app.Main.doMapState(Main.java:205)
	at com.googlecode.rockit.app.Main.doMain(Main.java:166)
	at com.googlecode.rockit.app.Main.main(Main.java:89)

An unexpected error occured!

Data & Web Science computational services

rockit process (v0.5.227)

ID: f94f5412-dc90-4e8f-b229-431f00c63ebd (error)

date / time / ip

input information

log